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Booking payments via Mollie, Stripe and PayPal: how it works

How to book payments via Mollie, Stripe and PayPal: payouts, transaction fees, a clearing account per payment provider and what Autoboeker matches automatically.

Sebastian de Goeij 6 min read Updated

Short answer

Payments via a provider such as Mollie, Stripe or PayPal do not reach the bank one to one: the provider collects payments, withholds fees and pays out a net amount periodically. Use a clearing account per provider: reconcile customer payments against invoices, book the payout to the bank off the clearing account and book withheld fees as costs.

Key takeaways

  • A payout is net: revenue minus fees, often for many payments.
  • Use a separate clearing account per provider.
  • Book transaction fees separately.
  • Autoboeker matches PayPal payments and brings Mollie, Stripe and PayPal payments into the flow.

How do you book provider payments?

Work with a clearing account per provider.

  1. 1Open a clearing account per provider.
  2. 2Book each customer payment from the clearing account against the invoice.
  3. 3Book withheld fees as costs.
  4. 4Book the payout to the bank off the clearing account.
  5. 5Check the clearing balance against the provider's balance.
EntryDebitCredit
Customer pays via providerProvider clearing accountAccounts receivable
Transaction feesPayment costsProvider clearing account
Payout to the bankBankProvider clearing account

How does Autoboeker help?

Connect brings payments via Mollie, Stripe and PayPal into the flow, bank matching matches PayPal payments, and invoices from the client portal have an iDEAL payment page via Mollie.

FAQ

Questions about this topic.

It is a net total of several payments after fees. Use a clearing account per provider.

Yes, for Exact Online, Twinfield and SnelStart.

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